Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs8052173 chr16:8711942 T/C 4.65E-5 183 3.2 13.1 13.33 KM Plot
ESCA rs8055693 chr16:8712015 G/T 4.65E-5 183 3.2 13.1 13.33 KM Plot
ESCA rs8100248 chr19:1302888 T/C 9.9E-6 179 13.02 20 4.47 KM Plot
ESCA rs8124182 chr20:44608901 G/A 7.93E-5 181 13.22 14.57 1.87 KM Plot
ESCA rs8131733 chr21:45587031 A/G 1.05E-6 182 2.93 15.32 13.33 KM Plot
ESCA rs8143071 chr22:19277809 G/T 4.91E-7 184 13.37 12.95 2.7 KM Plot
ESCA rs876147 chr10:126722814 G/A 3.32E-5 184 13.37 10.53 7.87 KM Plot
ESCA rs9283537 chr2:223930689 C/T 4.28E-5 184 13.33 13.73 6.85 KM Plot
ESCA rs9291645 chr4:10038254 G/A 1.17E-5 180 13.22 13.6 8.1 KM Plot
ESCA rs930639 chr2:223932102 T/C 4.37E-5 183 6.85 13.73 13.35 KM Plot
ESCA rs9332858 chr11:118390082 A/C 4.58E-10 181 13.37 15.57 1.4 KM Plot
ESCA rs9373473 chr6:146082282 A/G 6.39E-5 184 13.4 15.03 9.42 KM Plot
ESCA rs9376958 chr6:146023040 C/T 1.73E-5 177 10.1 13.5 13.5 KM Plot
ESCA rs9386113 chr6:145679715 A/G 5.14E-5 179 13.42 13.6 7.7 KM Plot
ESCA rs9386131 chr6:146121608 G/A 2.64E-5 184 13.57 13.5 9.77 KM Plot